FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459879
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21060.4579465468090519No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16400.35661554452366817No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13210.28724947214375957No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12540.2726804224589512No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12490.27159317994515947No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12460.2709408344368845No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12270.2668093128844762No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12250.2663744158789595No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10550.22940817041004263No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9830.2137518782114426No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9490.2063586291176592No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9330.20287945307352587No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8090.1759158387314924No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7000.15221395193083398No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6940.15090926091428397No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6640.14438580583153393No Hit
CAGTGCCTGCAGGTCTTCAGTTTTCATGTAGCCGGACAGGCCAG6370.13851469625705892No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5940.12916441063845055No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5920.1287295136329339No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5780.1256852345943172No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5720.12438054357776719No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5280.11481280945640049No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4860.10567997234055046No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4750.10328803881020877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)