FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459879
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30710.6677843519708445No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23750.5164401940510438No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23100.5023060413717522No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21260.4622955168642186No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14080.30616749188373465No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13690.2976870002761596No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13010.28290050208859285No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12990.2824656050830762No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10780.23440948597348432No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10600.23049541292383433No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10340.2248417518521176No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10320.22440685484660097No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8630.18765805788044246No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8370.18200439680872577No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7770.1689574866432257No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7090.154170988455659No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6610.14373346032325895No Hit
GAAAACGCTGCGTACTATCAGGTAGTTCCGG6300.13699255673775057No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6280.1365576597322339No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6220.1352529687156839No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6120.13307848368810057No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5570.12111881603639217No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5350.11633494897570884No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4940.10741956036261711No Hit

[OK]Adapter Content

Adapter graph