FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437812
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50521.1539199473746722No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27460.6272098526308095No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21130.4826272463979973No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19570.4469955140562616No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13470.3076663042584488No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12970.2962458772258412No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12440.28414022457127713No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12170.27797319397366904No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10500.23982896768475967No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9310.2126483513471536No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9260.2115063086438928No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9200.2101358573999799No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8200.18729500333476468No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7710.17610298484280923No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7660.17496094213954846No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6790.15508939910281125No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6580.15029281974911604No Hit
GAAAACGCTGCGTACTATCAGGTAGTTCCGG6390.14595305747672516No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6230.14229852082629074No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5570.1272235571432487No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5390.12311220341150997No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5200.11877244113911907No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4660.10643837994390286No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4620.10552474578129425No Hit

[OK]Adapter Content

Adapter graph