FastQCFastQC Report
Wed 31 May 2023
EGAF00007927445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences281671
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12690.450525613215418No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9720.3450834484203202No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7470.2652030205452461No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5600.19881350937796224No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5430.19277809927184553No Hit
TTTACGGGTCGGCGGCGGCGGCTGCTGTTGACGCTGCTGCAGGT4930.17502689307738462No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4530.16082592812181587No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4020.14271969780346574No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC3970.14094457718401968No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA3860.13703931182123824No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG3850.13668428769734903No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG3850.13668428769734903No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG3630.12887375697178624No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG3550.12603356398067248No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT3540.12567853985678326No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG3450.1224833227417803No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG3450.1224833227417803No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG3300.11715796088344202No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT3170.11254264727288218No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC3080.10934743015787922No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA3030.10757230953843314No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG2940.10437709242343018No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA2910.1033120200517625No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA2900.1029569959278733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)