FastQCFastQC Report
Sun 21 May 2023
EGAF00007927446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences281671
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30911.0973795669415736No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12710.45123566146319644No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9680.34366335192476327No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8210.29147480571304824No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6510.2311207046518811No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6090.2162096914485339No Hit
CCAGCGGCTGAAGCTCACGCCGCGCGTTCCG5470.1941981957674024No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5360.190292930404621No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5190.18425752029850428No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5120.18177235143127973No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4800.17041157946682475No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4410.15656563863514528No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4210.1494651561573609No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4070.14449481842291184No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4040.14342974605124417No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA3990.14165462543179808No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA3870.13739433594512748No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG3800.13490916707790296No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC3670.1302938534673431No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG3660.12993882934345388No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT3590.12745366047622936No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG3540.12567853985678326No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC3520.12496849160900482No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT3520.12496849160900482No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC3310.11751298500733126No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG3300.11715796088344202No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA3270.11609288851177438No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA3150.11183259902510376No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG3110.11041250252954689No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG3090.10970245428176845No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC2890.10260197180398409No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG2860.10153689943231642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)