FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences286964
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12760.4446550786858282No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9120.3178098994995888No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7990.2784321378291354No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6330.22058516050793828No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5420.18887386571137843No Hit
TTTACGGGTCGGCGGCGGCGGCTGCTGTTGACGCTGCTGCAGGT4610.16064732858477024No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4480.15611714361383308No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4480.15611714361383308No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4300.14984457980792015No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4270.14879915250693465No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4170.14531439483698305No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG3940.13729945219609427No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT3900.13590554912811362No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG3720.1296329853222007No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG3630.1264967034192442No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA3530.1230119457492926No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA3500.1219665184483071No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG3450.1202241396133313No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT3380.11778480924436514No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG3270.11395157580741835No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA3250.11325462427342803No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG3140.10942139083648122No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA3050.10628510893352476No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG3040.10593663316652961No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT2890.10070949666160214No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC2880.100361020894607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)