FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences286964
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30741.0712145077431316No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12620.4397764179478959No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9030.3146736175966323No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8620.3003861111498306No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6470.22546382124587058No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6360.22163058780892375No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6300.2195397332069528No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5880.20490375099315594No Hit
CCAGCGGCTGAAGCTCACGCCGCGCGTTCCG5040.17563178656556225No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4950.17249550466260577No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4870.16970769852664447No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4520.15751104668181376No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4460.15542019207984276No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4390.15298086171087663No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4080.14217811293402657No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT3980.13869335526407492No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3850.13416317029313782No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC3850.13416317029313782No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA3840.13381469452614264No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT3670.1278906064872249No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG3610.12579975188525389No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG3610.12579975188525389No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA3590.12510280035126356No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG3470.12092109114732162No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC3400.11848176077835547No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC3310.115345478875399No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG3270.11395157580741835No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA3170.11046681813746673No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG3110.10837596353549574No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA3090.10767901200150541No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC3020.10523968163253926No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG2990.10419425433155378No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG2970.10349730279756346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)