FastQCFastQC Report
Sun 21 May 2023
EGAF00007927449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420017
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19770.47069523376434763No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18610.4430773040138851No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11960.28475037915132007No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10850.25832287740734305No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8200.19523019306361408No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7940.18903996742988974No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6510.15499372644440582No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6340.1509462712223553No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5980.14237518957566003No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5020.11951897185113936No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4980.11856662944595099No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4920.11713811583816845No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4750.11309066061611793No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4700.11190023260963247No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4660.1109478902044441No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4540.10809086298887902No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4500.10713852058369065No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4480.10666234938109648No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4240.10094829494996631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)