FastQCFastQC Report
Fri 2 Jun 2023
EGAF00007927451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405358
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18280.45095939885237246No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17040.42036915516654416No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11490.2834531451211028No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10410.25681002965280075No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8390.20697753590653198No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7250.17885424735665756No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5960.14703052610285228No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5940.14653713507566152No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5650.1393829651813952No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4920.12137419268893176No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4800.11841384652578708No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4710.11619358690342857No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4660.11496010933545163No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4610.11372663176747468No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4590.11323324074028389No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4330.10681915738680378No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4310.10632576635961298No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4270.10533898430523142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)