FastQCFastQC Report
Wed 31 May 2023
EGAF00007927452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405358
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45601.1249315419949772No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41641.027240118611203No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11730.2893738374473922No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10340.255083161057633No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9490.23411404240202488No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8840.21807883401832456No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8670.21388501028720294No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6440.158871910755431No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6180.15245782740195085No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5650.1393829651813952No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5360.13222879528712891No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5310.13099531771915196No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4860.11989401960735942No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4800.11841384652578708No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4800.11841384652578708No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4710.11619358690342857No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4660.11496010933545163No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4640.11446671830826083No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4510.11125967663152078No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4280.1055856798188268No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4120.10163855160130059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)