FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489375
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24430.49920817369093234No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17080.34901660280970626No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9110.1861558109833972No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8600.17573435504469986No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8530.17430395913154534No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6540.13363984674329502No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6240.1275095785440613No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5690.11627075351213281No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5580.11402298850574713No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5340.10911877394636015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)