FastQCFastQC Report
Wed 31 May 2023
EGAF00007927458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471262
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17030.36137010834737365No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8110.1720911085553259No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7710.16360326103101883No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7510.1593593372688653No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7480.15872274870454228No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6070.12880308618135985No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4960.10524930930140772No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG4880.1035517397965463No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4800.10185417029168488No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4720.10015660078682347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)