FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473493
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17610.37191679708042147No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8290.1750817857919758No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8090.17085785851110788No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7680.16219880758532862No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7380.1558629166640267No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6080.12840738933838514No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG5300.11193407294300022No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5220.11024450203065304No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4870.10285262928913415No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4840.10221904019700395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)