FastQCFastQC Report
Sun 21 May 2023
EGAF00007927461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458866
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21110.4600471597372653No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15790.344109173484198No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14150.3083688920076885No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13810.30095932145768045No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13340.29071667981502225No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11690.25475846979292427No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11620.253232969973805No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10950.23863175741937734No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10650.23209390105172317No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10530.22947875850466148No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9520.20746797540022577No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9300.20267354739727939No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9240.20136597612374854No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8520.18567512084137855No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7930.17281733665165866No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7280.15865198118840795No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7000.15254998191193073No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6820.14862726809133822No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6380.13903841208544543No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6380.13903841208544543No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6030.1314109129898489No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5970.13010334171631804No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5770.1257447708045486No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5700.1242192709854293No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5370.1170276289810097No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5080.110707701158944No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5010.1091822013398247No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4980.1085284157030593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)