FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458866
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35650.7769152650229043No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28960.6311210680242162No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16970.36982474186363773No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15700.34214781657390175No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14690.32013703346946604No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14630.3188294621959352No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12170.26521903998117097No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11570.25214332724586264No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11390.24822061342527013No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11330.2469130421517393No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11270.24560547087820847No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10430.22729947304877673No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10040.21880025977082637No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9920.21618511722376466No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9100.19831497648550994No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8790.1915591915722673No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8460.18436754956784768No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8440.18393169247667077No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8120.17695797901783963No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7630.1662794802840045No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6980.1521141248207538No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6720.14644798263545347No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6620.14426869717956875No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6610.14405076863398028No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5870.12792405626043332No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5740.1250909851677832No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5720.12465512807660624No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5720.12465512807660624No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4880.10634913024717456No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4790.10438777333687832No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4670.10177263078981665No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)