FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460940
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20970.45493990541068247No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14750.319998264416193No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14500.31457456501930836No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14310.31045255347767603No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG12850.27877814899986986No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12820.27812730507224365No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11730.2544799757018267No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11070.24016140929405128No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10920.23690718965592053No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10180.22085303944114199No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9960.21608018397188353No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9700.21043953659912354No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9040.1961209701913481No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8190.17768039224194038No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7710.1672668893999219No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7620.16531435761704344No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6760.14665683169176033No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6580.14275176812600338No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6270.13602638087386643No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6250.13559248492211567No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6150.13342300516336184No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5950.12908404564585413No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5780.12539593005597258No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5570.12084002256258948No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5330.11563327114158026No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5270.11433158328632795No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5200.11281294745520024No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5110.11086041567232177No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)