FastQCFastQC Report
Wed 31 May 2023
EGAF00007927464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460940
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36600.7940295917039094No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28950.6280643901592398No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16260.35275740877337614No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15840.34364559378660997No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15140.328459235475333No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14660.31804573263331454No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13500.29287976743176986No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11800.2559986115329544No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11560.25079186011194515No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11530.250141016184319No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11520.2499240682084436No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10970.2379919295352974No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10090.21890050765826355No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9770.21195817243025122No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9590.2080531088644943No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9510.20631752505749118No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8540.18527357139757886No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8290.17984987200069422No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8040.1744261726038096No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7250.15728728250965418No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6850.14860936347463877No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6760.14665683169176033No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6600.14318566407775415No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6230.1351585889703649No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6160.1336399531392372No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5910.1282162537423526No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5350.11606716709333102No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5290.11476547923807871No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5230.11346379138282639No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4960.10760619603419101No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4830.10478587234781099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)