FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501741
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14750.29397637426480994No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13380.2666714500110615No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11140.2220269023261005No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9640.19213099985849275No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9150.18236500505240752No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9130.18196639301950607No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9070.18077055692080177No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8890.17718304862468884No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8630.17200109219697016No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8620.17180178618051944No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC8260.16462676958829356No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8260.16462676958829356No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7730.15406355071640548No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7450.14848298225578538No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7330.14609131005837672No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6550.13054544077522068No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6530.13014682874231925No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6520.12994752272586851No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6460.1287516866271642No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6420.12795446256136134No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6370.12695793247910775No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6300.1255627903639527No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6190.12337042418299482No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6080.12117805800203692No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6020.11998222190333259No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5990.11938430385398044No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5860.1167933256401211No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5790.11539818352496607No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5790.11539818352496607No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5610.11181067522885314No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5530.11021622709724739No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5210.1038384345708244No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5090.10144676237341577No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5030.10025092627471147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)