FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475691
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37890.7965254755713268No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13910.2924167158933005No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12350.259622317849192No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10670.2243052738016906No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9360.19676638826465082No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8890.1868860247513617No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8780.18457359924825148No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8500.17868742524033457No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8170.17175014873100394No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8160.1715399282307212No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8060.16943772322789374No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7640.16060846221601838No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7320.1538814062069705No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7110.1494667757010328No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7030.14778501169877084No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6510.13685354568406802No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6270.1318082536772821No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6250.13138781267671662No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5970.1255016386687997No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5890.12381987466653774No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5880.12360965416625498No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5860.12318921316568948No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5600.11772348015833807No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5580.11730303915777258No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5550.11667237765692436No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5480.11520083415494511No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5380.11309862915211766No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5170.10868399864617999No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5050.10616135264278702No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5040.10595113214250428No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG4950.10405914763995955No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4900.10300804513854582No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4800.10090584013571835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)