FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452177
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21440.4741506091641105No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20860.46132377365500676No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20710.45800648860954896No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17190.3801608662094711No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16870.3730839914458276No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12640.2795365531639159No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12640.2795365531639159No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12220.2702481550366339No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11200.2476906167275204No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11140.24636370270933725No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10770.23818106626387453No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10370.22933497280932025No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10240.2264599924365901No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA10220.22601768776386236No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9680.21407546160021407No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9610.21252739524566708No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9120.20169093076383804No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9060.2003640167456549No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8100.1791333924547246No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7830.17316227937290044No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7820.17294112703653658No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7740.1711719083456257No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7320.16188351021834368No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6890.15237395975469784No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6650.14706630368196524No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6180.13667214387286394No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6020.13313370649104223No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6010.13291255415467837No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5990.13247024948195063No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5960.1318067924728591No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5670.12539337471830722No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5560.12296069901830478No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5520.12207608967284936No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5470.12097032799103005No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5330.11787419528193606No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5270.11654728126375291No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5060.11190308220011191No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4940.1092492541637456No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG4550.10062431304555518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)