FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454117
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21660.47696959153698276No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21620.4760887612663697No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20590.4534073817980828No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17410.383381375284343No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17330.3816197147431169No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13200.29067398930231636No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12750.28076464875791923No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12020.2646894963192305No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11600.2554407784777932No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11200.24663247577166236No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10810.23804438063318484No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10630.23408064441542598No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10430.22967649306236057No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA10110.22262985089745593No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9860.21712466170612418No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9690.21338113305601863No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9480.20875677413529992No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9080.19994847142916916No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG8110.17858833736680196No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8030.1768266768255758No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7730.1702204497959777No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7430.1636142227663796No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7400.16295360006341977No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6920.15238363681606282No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6140.13520744653910777No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6110.13454682383614794No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5900.1299224649154293No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5890.12970225734777602No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5790.1275001816712433No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5740.12639914383297698No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5650.12441727572409754No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5640.12419706815644427No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5600.12331623788583118No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5570.12265561518287138No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5510.12133436977695175No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5220.11494835031500693No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5130.1129664822061275No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5060.11142502923255461No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG4740.10437838706764996No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4560.1004146508498911No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA4550.10019444328223785No Hit
GCGTACCAGATCGTTGTGCAGTTCCTGCTCTTTGATTGGGTTAT4550.10019444328223785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)