FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490934
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13410.27315280669091974No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11480.23383998663771507No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8760.17843539050055607No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7850.159899293998786No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7070.14401121128298305No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6420.13077114235314727No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6100.12425295457230504No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5640.11488305963734433No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5510.11223504585137717No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4940.10062452386675196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)