FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490934
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA27200.5540459613715897No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13410.27315280669091974No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11470.2336362932695637No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10640.2167297437130042No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8520.17354674966492442No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7470.15215894600903584No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6590.1342339296117197No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6030.12282710099524578No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5590.11386459279658773No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5530.11264243258767982No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5500.11203135248322585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)