FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469818
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13900.29585924762354787No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10370.22072376962994184No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8410.1790054872312257No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8080.17198149070491126No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6920.14729107867301805No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6060.12898611802868346No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5990.12749617937158644No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5460.11621521525356628No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5170.11004261224559297No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5070.10791412844974012No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4970.10578564465388725No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4780.10174152544176682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)