FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469818
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36810.7834948852534387No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26200.5576627545134499No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12090.257333690918611No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10740.2285991596745974No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10720.22817346291542684No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7280.15495362033808838No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6500.13835144673043603No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5720.1217492731227837No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5600.11919509256776027No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5490.11685376039232215No Hit

[OK]Adapter Content

Adapter graph