FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460013
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17520.3808588018164704No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17220.3743372469908459No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12220.265644666563771No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11770.2558623343253343No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11160.24260183951323117No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10590.2302108853445446No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10180.2212980937495245No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9430.20499420668546325No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9310.20238558475521345No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8650.18803816413883956No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7930.17238643255734076No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6780.14738713905911355No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC6420.13956127326836415No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6160.13390925908615625No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5810.12630077845626103No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5670.12325738620430292No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5510.11977922363063653No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4950.10760565462280415No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC4770.10369272172742945No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG4700.1021710256014504No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC4610.10021455915376304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)