FastQCFastQC Report
Wed 31 May 2023
EGAF00007927486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460013
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22440.48781230095671213No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18100.39346714114601106No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12500.2717314510676872No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12330.2680359033331667No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11840.25738403045131336No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11700.25434063819935526No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11270.2449930762826268No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11040.23999321758298134No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10210.22195024923208692No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9410.20455943636375493No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8950.19455971896446406No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8400.1826035351174858No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7870.1710821215922159No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7180.15608254549327952No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7040.15303915324132145No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC6710.1458654429331345No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6540.14216989519861395No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6470.1406481990726349No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6330.1376048068206768No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6030.13108325199505233No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5720.12434431200857365No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT5170.11238812816159542No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5010.10890996558792904No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4950.10760565462280415No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4930.10717088430109584No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG4840.1052144178534085No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4790.10412749204913774No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4670.10151887011888795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)