FastQCFastQC Report
Sun 21 May 2023
EGAF00007927488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477493
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18710.39183820495797844No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11660.24419206145430403No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10590.22178335598637047No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10060.21068371682935663No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9240.1935106902090711No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8910.18659959413017574No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8440.17675651789659744No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8370.17529052781925597No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7880.16502859727786584No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7400.15497609389038164No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6530.1367559315005665No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6500.13612765003884875No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6310.13214853411463623No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4930.10324758687561912No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4920.10303815972171321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)