FastQCFastQC Report
Sun 21 May 2023
EGAF00007927490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452458
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36280.801842380950276No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17910.3958378457226969No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10410.2300766037952694No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9650.21327946461329006No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9450.20885916482855865No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8990.19869247532367643No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8550.18896781579726737No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7340.1622250020996424No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7270.1606778971749864No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6930.15316338754094302No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6370.1407865481436951No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6230.13769233829438313No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5960.13172493358499573No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4910.10851835971515589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)