FastQCFastQC Report
Wed 31 May 2023
EGAF00007927491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455664
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT29030.637092243407423No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC27180.5964921521120826No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC24140.5297763264159556No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23890.524289827592261No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18610.40841497243582997No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15310.3359931879630605No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG15010.32940938937462694No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15000.32918992942167913No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14950.3280926296569402No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13490.29605147652656344No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13080.2870536184557042No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA11200.2457951473015204No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10560.2317497103128621No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10500.2304329505951754No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9510.20870641525334455No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG9090.1994890972295376No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8080.17732364198181116No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7940.17425120264054217No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7760.170300923487482No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7190.1577917061694582No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7110.15603602654587592No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6710.14725762842796447No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6680.14659924856912113No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6640.14572140875732997No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6180.1356262509217318No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6160.13518733101583622No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5930.13013975209803713No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG5890.129261912286246No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5830.1279451525685593No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5730.12575055303908142No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5170.11346079567400541No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT4960.1088521366621019No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4830.10599915727378068No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4820.1057796973208329No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4660.10226833807366832No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4650.10204887812072053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)