FastQCFastQC Report
Sun 21 May 2023
EGAF00007927493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456076
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT29880.6551539655671423No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC27360.5999000166638894No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23710.5198694954349714No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC23470.5146072145870425No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19320.42361360825827277No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15280.3350318806514704No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15170.332620001929503No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14900.326699935975583No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG14800.3245073189556127No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13720.3008270551399328No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13650.29929222322595356No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA11360.24908129346863242No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9900.2170690849770652No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9740.21356089774511267No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9050.19843184030731723No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG8510.18659170839947728No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8450.18527613818749505No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7860.17233969776966998No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7400.16225365947780634No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7380.16181513607381226No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7160.15699137862987747No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6830.1497557424639753No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6740.14778238714600198No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6270.13747708715214133No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6240.1368193020461502No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5970.13089923609223023No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5800.12717178715828065No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5720.12541769354230436No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG5690.12475990843631324No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5280.11577017865443479No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5070.11116568291249704No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5070.11116568291249704No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4890.1072189722765504No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4810.10546487866057411No Hit
CAGGTCACGCAGACCCACCAGGCGGCAGTTACGTGCTTCGATAC4770.10458783185258597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)