FastQCFastQC Report
Sun 21 May 2023
EGAF00007927494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456076
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA61201.3418816162218576No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36370.7974548101632183No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA33160.72707180382217No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33010.7237828782922144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA30610.6711600698129259No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19800.4341381699541304No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17040.37362194020294864No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15950.34972241468527177No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15510.3400748997974022No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14640.32099913172366007No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12410.27210377217832116No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10980.24074934879274507No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10380.22759364667292292No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9750.21378015944710968No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC8830.19360808286338244No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8820.19338882116138537No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8760.19207325094940317No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8490.1861531849954832No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7960.17453231478964032No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7810.1712433892596848No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7720.16927003394171147No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7460.16356922968978854No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7370.16159587437181522No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7320.16049956586183003No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6710.14712460204001088No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6610.1449319850200405No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6300.13813487225813242No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT6290.13791561055613538No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6050.13265332970820654No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5920.12980292758224507No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5860.12848735737026284No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5620.123225076522334No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5320.11664722546242293No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5300.11620870205842887No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4850.10634192546856225No Hit
GGTCACCACTATGACGGCGTTGCCATGCAGT4820.10568414036257114No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4700.10305299993860673No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4680.10261447653461264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)