FastQCFastQC Report
Wed 8 May 2024
EGAF00007927496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480380
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16090.3349431699904243No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15830.32953078812606684No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14120.29393396894125484No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9040.18818435405304135No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8470.176318747658104No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8330.17340438819268078No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8260.1719472084599692No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8200.17069819726050212No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8150.16965735459427952No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7700.16028977059827637No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7320.1523793663349848No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7180.1494650068695616No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6270.13052167034431075No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5780.12032141221532952No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5770.12011324368208502No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5330.11095382821932637No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5130.10679045755443609No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4870.10137807569007867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)