FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456345
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38660.8471660695307278No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15740.3449144835595876No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15110.3311091389190196No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12780.28005127699437926No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8320.18231820223734235No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8210.17990774523660827No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7970.1746485663259157No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7750.16982765232444752No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7710.16895112250599875No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7260.1590901620484502No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6540.14331262531637248No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6430.14090216831563837No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5650.12380983685588755No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4990.10934709485148299No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4980.1091279623968708No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4920.10781316766919766No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4830.10584097557768794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)