FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433798
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC10580.24389231854457602No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9400.21669071779952884No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8600.19824895458254765No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8140.18764494073278346No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6990.16113490610837303No Hit
CGGAACGCCGTCAGCACCGTCTGCGCCCTTGATCAGCGCCCATT6640.15306663470094375No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6300.14522888533372674No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC5920.1364690478056607No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5290.12194615927228801No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5280.12171563723207576No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4750.10949796910082574No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4680.10788431481933988No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4470.10304335197488233No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4360.1005076095325474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)