FastQCFastQC Report
Wed 31 May 2023
EGAF00007927506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433798
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37340.8607692981525963No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21070.4857099387272417No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG10760.24804171526839683No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8610.1984794766227599No Hit
GCAGACGATGACAAAGGTACCAACATGTCTG7270.16758952323431645No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7220.1664369130332551No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6850.15790759754540132No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6640.15306663470094375No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5870.13531643760459938No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5760.13278069516226446No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5370.12379033559398614No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4930.11364736582464649No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4900.1129557997040097No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4630.10673170461827856No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4410.10166021973360873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)