FastQCFastQC Report
Sun 21 May 2023
EGAF00007927508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460104
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22960.49901761340914225No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12150.26407073183454177No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9560.20777911080972997No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8950.19452123867647317No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7700.1673534679116026No Hit
GCAGACGATGACAAAGGTACCAACATGTCTG7700.1673534679116026No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7510.16322396675534226No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7040.15300888494775094No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6410.13931632848225617No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6030.13105732616973553No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5240.11388729504633735No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5170.1123658998835046No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5030.1093231095578391No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4900.10649766139829255No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4840.10519360840157876No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4730.10280284457427016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)