FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435658
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC10980.25203255764843063No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9720.223110788737955No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9250.2123225098586506No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8330.19120502779703344No Hit
CGGAACGCCGTCAGCACCGTCTGCGCCCTTGATCAGCGCCCATT6560.15057682861327004No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6540.15011775291627838No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC6420.1473632987343283No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6060.13909993618847813No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5540.1271639680666945No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5130.11775291627836515No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4850.11132585652048166No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4490.10306249397463148No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4390.1007671154896731No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)