FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435658
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38230.8775231947995905No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22210.5098035615092572No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11330.260066382345785No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9150.21002713137369222No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7720.1772032190387873No Hit
GCAGACGATGACAAAGGTACCAACATGTCTG6920.1588401911591202No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6640.15241313140123675No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6500.149199601522295No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6400.14690422303733663No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5620.1290002708546612No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5050.11591661349039843No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4790.10994862942950664No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4620.10604648600507738No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4490.10306249397463148No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4390.1007671154896731No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)