FastQCFastQC Report
Wed 31 May 2023
EGAF00007927512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478301
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14450.3021110137758441No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14370.30043842684836536No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10800.22579923520962739No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8800.18398456202265936No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8540.17854865450835353No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8440.17645792084900513No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7410.1549233641577166No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7240.15136911693682428No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5620.1174992316553802No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4880.10202780257620202No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC4820.10077336238059297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)