FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479354
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14410.30061290820562675No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8220.17148078455588148No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7130.1487418484043108No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6750.1408145128652311No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6480.13518193235062187No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5960.12433399950767074No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5950.12412538541453706No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5710.11911864717932885No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5530.11536359350292269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)