FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442813
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38100.8604083439284754No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13980.31570888840210204No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11120.2511218053670511No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10720.2420886469006104No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10700.24163698897728836No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9170.20708515784315273No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8630.19489039391345783No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8470.19127713052688156No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7870.17772739282722053No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7160.1616935365492883No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7100.1603385627793222No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6440.14543385130969508No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6150.13888481142152556No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5970.13481989011162726No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5960.13459406114996625No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5260.11878603383369503No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4990.11268865186884758No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4930.11133367809888148No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4930.11133367809888148No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4720.1065912699040001No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4580.10342966444074587No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4560.10297800651742382No Hit

[OK]Adapter Content

Adapter graph