FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472256
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA15100.3197418349369833No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12290.2602402087003659No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11310.23948875186339613No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11150.23610075891042145No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10770.22805427564710662No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9220.19523309391516466No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9070.19205685052175092No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8390.1776578804716086No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8260.1749051361973167No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7830.1657999051361973No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7570.16029441658761348No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6890.1458954465374712No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6780.1435662013823011No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6440.13636671635723No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6120.12959073045128067No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6010.1272614852961106No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5860.12408524190269685No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5510.11667400731806478No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5070.10735702669738448No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5000.10587477978045805No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4910.1039690337444098No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4760.10079279035099607No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4730.10015754167231332No Hit

[OK]Adapter Content

Adapter graph