FastQCFastQC Report
Wed 31 May 2023
EGAF00007927522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462695
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28200.609472762835129No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14980.3237553896195118No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13320.28787862414765664No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12650.27339824290299225No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG11630.2513534833961897No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11460.24767935681172262No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10770.2327667253806503No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8660.18716433071461763No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8440.1824095786641308No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG8140.17592582586801242No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8130.17570970077480846No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7940.1716033240039335No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7540.16295832027577561No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7540.16295832027577561No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7510.16230994499616377No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7430.1605809442505322No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7310.15798744313208485No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7250.15669069257286117No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6610.1428586866078086No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6100.13183630685440734No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5920.1279460551767363No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC5790.125136428965085No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5690.12297517803304553No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5360.1158430499573153No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5300.1145462993980916No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5080.1097915473476048No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5050.10914317206799296No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4820.10417229492430218No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4770.10309166945828246No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG4690.10136266871265089No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4670.10093041852624299No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4660.10071429343303903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)