FastQCFastQC Report
Sun 21 May 2023
EGAF00007927523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445060
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7220.1622253179346605No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7080.1590796746506089No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC5720.12852199703410777No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5510.12380353210803038No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4820.10830000449377612No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4750.10672718285175034No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4680.10515436120972453No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4540.10200871792567295No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)