FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445060
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40430.908416842672898No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9900.22244191794364804No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7210.16200062912865681No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7150.1606524962926347No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7110.15975374106861998No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5770.1296454410641262No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5130.11526535747989036No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4980.11189502538983508No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4850.10897407091178717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)