FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447346
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7500.16765546132076736No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7010.1567019711811439No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC5800.12965355675472676No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5350.11959422907548072No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5340.11937068846038636No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4690.1048405484792532No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4650.10394638601887576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)