FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447346
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40850.9131634126604462No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10260.22935267108680976No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7640.17078502993208836No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7120.15916091794718182No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7000.15647843056604954No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5910.1321125035207647No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5370.12004131030566945No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5060.11311155123774438No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4760.10640533278491368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)