FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478336
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52581.0992273213807868No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18810.39323822584961204No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18370.3840396708589778No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17010.35560777361519935No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16400.34285523146909286No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12280.25672330746588173No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10940.2287095263580412No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10580.2211834359111587No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9370.19588740968691465No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9000.18815226117206316No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8720.1822986352689323No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8710.18208957720096333No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8600.1797899384533048No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8150.17038232539470163No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7110.14864028632592988No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7070.14780405405405406No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6890.1440410088306128No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5990.12522578271340648No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5630.11769969226652396No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5570.11644534385871019No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC5390.11268229863526893No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5310.11100983409151725No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5280.1103826598876104No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5150.10766490500401392No Hit

[OK]Adapter Content

Adapter graph