FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479411
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53031.1061490036732573No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18320.3821355788665675No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18150.37858956094040397No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17320.36127664988913477No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16850.35147295326974143No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12680.26449121943384696No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11020.22986539733130862No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10610.2213132364505612No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9920.20692057545613263No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9330.19461380735944733No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9110.19002484298441213No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8900.18564446789915126No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8730.18209844997298769No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8690.1812640928138904No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7290.15206159224548457No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7220.15060146721706427No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6920.14434378852383445No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6020.125570752444145No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5940.12390203812595038No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5670.11827012730204355No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5610.11701859156339758No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC5370.11201244860881374No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5120.10679771636445555No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5040.10512900204626094No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4990.1040860555973893No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4880.1017915734098717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)